species:   Rhsol
pid:       PID0614
parent:    Rhi-milR-147
paralog:   
locus:     KB317703.1:122191-122288
matures:   ['UGGGCAUUUGUAGGUUGGUCUGCA', 'CAGAAAGGCCACAUGAUGUUGC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317703.1:122191-122288

1 out of bounds
28 alignments
20 proper strand
17 stranded perfect matches

          *************************                           ***************************         
CUUAUGUAACCUGCAGAAAGGCCACAUGAUGUUGCCAAGUCCCAUAAUCAGUGGCACUGCAGGGUGGGCAUUUGUAGGUUGGUCUGCAGAUACAUGUA
..((((((..(((((((..(((((((.((((((.((.(((.((((.....)))).)))...))...))))))))).))))..))))))).))))))..
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGCA---------- l=24 a=4 c
-------------CAGAAAGGCCACAUGAUGUUGC--------------------------------------------------------------- l=22 a=0 c*
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGCAG--------- l=25 a=5 ma
------------GCAGAAAGGCCACAUGAUGUUGC--------------------------------------------------------------- l=23 a=0 ma*

------------------------------------------CAUAAUCAGUGGCACUGCAGGGg--------------------------------- l=23 a=1 
---------------------------------------------------UGGCACUGCAGGGUGGGCAUUUGU----------------------- l=24 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUC-------------- l=20 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUu-------------- l=20 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCU------------- l=21 a=3 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUu------------ l=22 a=1 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGC----------- l=23 a=2 
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGCA---------- l=24 a=4 (c)
----------------------------------------------------------------UGGGCAUUUGUAGGUUGGUCUGCAG--------- l=25 a=5 (ma)
--------------------------------------------------------------------------UAGGUUGGUCUGCAGAUACAUGU- l=23 a=1 

mb-01011
ax-1011001
ku-01
ss-111010111100
fn-101
